Oct 25 – 27, 2022
Resort Punta Skala
Europe/Zagreb timezone
Registration is open again for remote participation only.

The other cortex: surface-based analyses of the hippocampus

Oct 26, 2022, 12:30 PM
Hall Ventus (Fortis Club)

Hall Ventus

Fortis Club

Resort Punta Skala


Jordan DeKraker (McGill University)


The hippocampus (or archicortex) has a complex folded laminar structure that can be fully appreciated in the multiplanar views afforded by 3D BigBrain [1]. Here, we will look at how analysis of the hippocampus and hippocampal subfields can be performed using the same principles as surface-based analysis of the neocortex and neocortical parcels [2]. That is, at high resolution the various folds or ‘digitations' within the hippocampus resemble neocortical gyrifications. By carefully fitting a surface to these folds, we extract depth-wise profiles of neuronal distributions across the 3D BigBrain hippocampi. Two complementary sets of results show that: i) within the hippocampus, unsupervised clustering of these profiles yields boundaries that almost perfectly overlap with the classical definitions of hippocampal subfields [3], and, ii) between the hippocampus and neocortex, there exists a continuum or gradient of changes in profile similarity, with greatest complexity in the neocortex [4].

In the domain of MRI, spatial resolution is considerably lower but with strong prior information a surface can accurately fit the folds of the hippocampus along its natural anterior-posterior and medial-lateral 2D axes [5]. Using MRI data from the Human Connectome Project dataset [6], we show that structural measures track the hippocampus’ medial-lateral axis, whereas resting state connectivity (rsfMRI) tracks its anterior-posterior axis. That is, examining structural measures like thickness, gyrification, and curvature, there are clear differences across the medial-lateral extent of the hippocampus in line with the hippocampal subfields. However, the primary differences in functional connectivity are aligned along the anterior-posterior axis of the hippocampus in a geodesic fashion. That is, the anterior hippocampus tends to show greater connectivity with anterior temporal and inferior frontal regions of the neocortex, whereas the posterior hippocampus tends to show greater connectivity to the anterior cingulate, medial visual, temporal-parietal junction, and lateral frontal neocortex.

Together these results present a simple model for understanding the hippocampus: it shows a stereotyped microstructure across its medial-lateral axis that repeats across its anterior-posterior axis with different input/output connectivity to the rest of the brain. This organizing principle is obviated by treating the hippocampus as a 2D folded structure with two natural geodesic axes rather than as a subcortical volume with subfields as subvolumes, as in many previous works.

1. Amunts K, et al. BigBrain: an ultrahigh-resolution 3D human brain model. Science. 2013;340: 1472–1475.
2. DeKraker J, et al. Surface-based hippocampal subfield segmentation. Trends Neurosci. 2021;44: 856–863.
3. DeKraker J, et al. Hippocampal subfields revealed through unfolding and unsupervised clustering of laminar and morphological features in 3D BigBrain. Neuroimage. 2020;206: 116328.
4. Paquola C, et al. Convergence of cortical types and functional motifs in the human mesiotemporal lobe. Elife. 2020;9. doi:10.7554/eLife.60673
5. DeKraker J, et al. Unfolding the hippocampus: An intrinsic coordinate system for subfield segmentations and quantitative mapping. Neuroimage. 2018;167: 408–418.
6. Van Essen DC, et al. The WU-Minn Human Connectome Project: an overview. Neuroimage. 2013;80: 62–79

Primary authors

Jordan DeKraker (McGill University) Dr Roy Haast (Aix-Marseille University) Casey Paquola (INM-1, Forschungszentrum Jülich) Dr Reinder Vos de Wael (McGill University) Dr Ali Khan (University of Western Ontario) Boris Bernhardt (McConnell Brain Imaging Centre, Montréal Neurological Institute and Hospital, McGill University) Alan C Evans (Montreal Neurological Institute McGill University Montreal)

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