PIC meets HI

Thursday 5 Oct 2023, 09:30 → 17:30 Europe/Berlin

Building 3 seminar room BAH1 (DESY Hamburg)

The Pelagic Imaging Consortium meets Helmholtz Imaging

In this one day workshop we want to introduce the portfolio of Helmholtz Imaging to the pelagic imaging community of the Helmholtz Association, identify possibilities of common projects, and strengthen the interconnection of the Pelagic Imaging Consortium.

 

Please register, so that we can order enough coffee. We invite those of you who already arrive on the 4.10. in Hamburg to join us for dinner at https://altes-maedchen.com/de/  (pay your own / if you would like to join, please indicate during the registration.) We will also offer a short version of a guided tour to the DESY/PETRAIII beamlines after the workshop (5.10.2023; 17:00 to 17:30). Please indicate your interest in this tour during registration.

 

You can find information on how to get to DESY here. We will meet in building 94, room O1.104. (Once in front of the building take the stairs in the corner, the red ones, and you will find us.) We will meet in Building 3 seminar room BAH1 (once you enter the building turn to the right and follow the signs.) Map of DESY.

09:30 → 10:00 Arrival with coffee

10:00 → 11:00 Session: PIC

Convener: Philipp Heuser (Helmholtz Imaging/DESY)

10:00 Welcome, Workshop goals, Organisational issues

Speaker: Rainer Kiko (GEOMAR Helmholtz Zentrum für Ozeanforschung Kiel)

10:10 Pelagic Imaging Contributors at HEREON

Speaker: Klas Ove Möller (Helmholtz-Zentrum Hereon)

10:20 Pelagic Imaging Contributors at AWI

Speaker: Babara Niehoff (AWI)

10:30 Pelagic Imaging Contributors at GEOMAR

Speaker: Rainer Kiko (GEOMAR Helmholtz Zentrum für Ozeanforschung Kiel)

10:40 Pelagic Imaging Contributors from other Helmholtz locations and friends introduce themselves

Leipzig, Bielefeld, Konstanz, Karlsruhe ...

11:00 → 12:00 Session: Helmholtz Imaging

Convener: Rainer Kiko (GEOMAR Helmholtz Zentrum für Ozeanforschung Kiel)

11:00 Helmholtz Imaging in a Nutshell

Helmholtz Imaging's mission is to unlock the potential of imaging in the Helmholtz Association. Here we will introduce the portfolio of Helmholtz Imaging from the help desk, to modalities, to solutions, to projects.

Speaker: Philipp Heuser (Helmholtz Imaging/DESY)

11:30 Q&A

11:35 DIPLO (Digital Plankton Ocean)

Plankton classification as a HI project

Speaker: Veit Dausmann (GEOMAR)

11:45 HIFIS

Helmholtz Federated IT Services. HIFIS provides and brokers digital services for everyone in Helmholtz and collaboration partners.

Speaker: Sophie Servan (DESY)

11:55 Q&A

12:00 → 13:30 Lunch: Lunch (Pay your own) at DESY canteen

13:30 → 14:54 Session: Pelagic imaging workflows, problems and solutions

Convener: Klas Ove Möller (Helmholtz-Zentrum Hereon)

13:30 HEREON workflow

Speaker: Ankita Ravi Vaswani (HEREON)

13:42 Operational pelagic imaging at global levels

Speaker: Rainer Kiko (GEOMAR Helmholtz Zentrum für Ozeanforschung Kiel)

13:54 Trait extraction from images - MAZE-IPP

Speakers: Astrid Cornils (Alfred-Wegener-Institut), Babara Niehoff (AWI), Simon-Martin Schröder (CAU Kiel)

14:06 Fjords Cruise presentation

Speaker: Helena Hauss (NORCE Research / GEOMAR)

14:18 Marine biology computer vision with BIIGLE

Speaker: Daniel Langenkämper (Universität Bielefeld)

14:30 HelmholtzNet and Foundation Models

Speakers: Paul Jäger (Helmholtz Imaging / DKFZ), Tim Rädsch (Helmholtz Imaging / DKFZ)

14:54 → 15:24 Coffee

15:24 → 16:00 Session: Data management services

Convener: Babara Niehoff

15:24 NFDI BioImage

Speaker: Riccardo Massei (UFZ Leipzig)

15:36 Image data management support via ELEMENTS, iFDOs, MareHub

Speaker: Carsten Schirnick (GEOMAR Helmholtz Centre for Ocean Research Kiel)

16:00 → 17:00 Session: Discussion of common actions

Convener: Rainer Kiko (GEOMAR Helmholtz Zentrum für Ozeanforschung Kiel)

16:00 Discussion

Possible topics of common actions: Own PIC Lab as Helmholtz Modality, support of a Pelagic Imaging FoundationModel, support of HelmholtzNet, User facility for instrument rental, common proposals, financing of a PIC project manager, engagement in NFDI Bioimage, ...

17:00 → 17:30 Tour to PETRA III beamlines (optional)

sight seeing ;-)
Please indicate your interest during registration.