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SedDNA Meeting

6–9 Jun 2023
Alfred Wegener Institute Potsdam
Europe/Berlin timezone

Liv Heinecke

Contribution List

29 / 29
2. Welcome & outline of the day
Kathleen Stoof-Leichsenring, Ulrike Herzschuh
06/06/2023, 13:00
1. Going north: postglacial arrival of animals to N Fennoscandia in relation to vegetation changes
Inger Alsos (The Arctic University, Norway)
06/06/2023, 13:20
4. Paleogenetic perspectives on life and climate history in Southeast Alaska
Charlotte Lindqvist (University at Buffalo, USA)
06/06/2023, 13:40
5. Vegetation dynamics from sedimentary ancient DNA
Ulrike Herzschuh (Alfred Wegener Instiute Potsdam, Germany)
06/06/2023, 14:00
3. Benchmarking Variables Affecting Taxa Classification of Ancient Metagenomics Data
Yucheng Wang (University of Cambridge, UK)
06/06/2023, 14:20
6. Recovering ancient DNA from the seafloor to reconstruct Antarctic ecosystems
Linda Armbrecht (University of Tasmania, Australia)
06/06/2023, 16:20
7. Microbial functional genes recovered with metagenomics from sedimentary archives
Eric Capo (Instituto de Ciencias del Mar, Spain)
06/06/2023, 16:40
8. Assessing the response of microeukaryote communities to anthropogenic changes in temperate lakes through the sedDNA approach
Cecilia Barouillet (INRAE, France)
06/06/2023, 17:00
10. SedaDNA in Polar Paleoceanography
Stijn de Schepper (Norce, Norway)
06/06/2023, 17:20
9. Sedimentary ancient DNA reveals plankton community shifts in subarctic western Bering Sea back to the Eemian interglacial
Kathleen Stoof-Leichsenring (Alfred Wegener Institute Potsdam, Germany)
06/06/2023, 17:40
11. Welcome & outline of the day
Ulrike Herzschuh, Kathleen Stoof-Leichsenring (Alfred Wegener Instiute Potsdam, Germany)
07/06/2023, 08:55
12. Ancient DNA damage accumulation in time-series data
Mikkel Pedersen (University of Copenhagen, Denmark)
07/06/2023, 09:00
13. From where, from when and how? Assessing the provenance and spatiotemporal fidelity of sedimentary DNA
Laura Epp (University of Konstanz)
07/06/2023, 09:20
14. Hunting for the causes and consequences of mammoth extinction on Wrangel Island
Pete Heintzman (Stockholm University, Sweden)
07/06/2023, 09:40
15. Can de-extinction become real?
Michael Hofreiter (University of Potsdam)
07/06/2023, 10:00
17. Bioinformatic Resources for Ancient Metagenomics
James Fellows Yates (Max Planck Institute for Evolutionary Anthropology, Germany)
07/06/2023, 11:00
16. Population genetics from sediments: challenges and perspectives
Benjamin Vernot (Max Planck Research Group for MPI Evolutionary Anthropology, Germany)
07/06/2023, 11:20
18. Ecological insights derived from contemporary spatio-temporal eDNA analyses
Simon Creer (Bangor University, UK)
07/06/2023, 11:40
19. Some thoughts for using 
plant sedDNA to reconstruct climate
 by adapting the pollen-based method CREST
Manuel Chevalier (University of Bonn, Germany)
07/06/2023, 12:00
20. Detecting critical transitions with paleo-records: a multivariate approach
Zofia Taranu (Université de Montréal, Canada)
07/06/2023, 12:20
21. SedDNA Community Meeting
Eric Capo
07/06/2023, 13:40
22. Welcome & outline of the day
08/06/2023, 08:55
23. Labtours
08/06/2023, 09:00
24. Method Discussion
08/06/2023, 10:30

We will have nine break out groups. Please find your breakout group on the information board next to the registration desk.
Break out room Moderator Room
1 Katharina Dulias A45 S 001 lecture hall
2 Weihan Jia A45 S 208 Office Ulrike
3 Kevin Nota ...
25. Ancient DNA and network analyses - joint project initiative
Ulrike Herzschuh
08/06/2023, 13:00

This will be a brainstorming workshop where we can share our ideas about potential future collaborative projects on this and other topics. 
Please bring slides on: (maximum 3 slides)

1.Examples of species interactions inferred from sedaDNA
2.Examples of network analysis using environmental/ancient genomic data
3.Funding opportunities for collaborative projects
4.Further joint project...
28. Hands-on Workshop metabarcoding
Eric Coissac
08/06/2023, 13:00

Implementation of a DNA metabarcoding pipeline using obitools4

OBITools have been around for over 15 years. OBITools4 is their latest version, with a considerable improvement in terms of computational efficiency and ease of installation. During this tutorial, based on the analysis of a toy dataset, we will review the principles behind OBITools, the main algorithms they implement, their...
26. Hands-on workshop metagenomics
Kathleen Stoof-Leichsenring
08/06/2023, 15:30

The hands-on workshop will be about the data analyses pipelines of metagenomic shotgun data.

This workshop is recommended for students and early PhDs.
27. Modelling workshop on detecting aquatic transitions in sedDNA records (PAGES PaleoECOGEN))
Zofia Taranu
08/06/2023, 15:30

The PaleoECOGEN workshop will be split into parts:
- The first part (Thursday) will be an R workshop, open an to all people, on methods used to detect critical transitions. In particular, the workshop will present Online Dynamic Linear Models (Online DML) for uni- and multivariate datasets.
- The second part (Friday), again open to all, will be a bring your own data session followed by a...
29. Modelling workshop on detecting aquatic transitions in sedDNA records (PAGES PaleoECOGEN))
Zofia Taranu
09/06/2023, 09:00

The PaleoECOGEN workshop will be split into parts:
- The first part (Thursday) will be an R workshop, open an to all people, on methods used to detect critical transitions. In particular, the workshop will present Online Dynamic Linear Models (Online DML) for uni- and multivariate datasets.
- The second part (Friday), again open to all, will be a bring your own data session followed by a...
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