15–16 Jun 2023
Virtual
Europe/Berlin timezone

Arbor: when you really need compartments

W2
16 Jun 2023, 10:30
1h 30m
Zoom

Zoom

Workshop Workshop

Speakers

Brent Huisman (JSC, Forschungszentrum Jülich, Germany) Thorsten Hater (JSC, Forschungszentrum Jülich, Germany)

Description

Sometimes you might phrase research questions such that cell morphologies are needed to answer them. For instance: you are interested in a biological question: how are new connections formed? Which chemicals play a role, at which concentrations? Or you have a wetlab experiment you wish to model: you have measured local field potentials of a tissue with a new and microscopic sensor because you suspect the dendritic morphology plays a role. Although NEST offers options to model few-compartment cells, you may want or need more. Enter Arbor. Née Nest-MultiCompartment, it is a fresh start in the world of morphologically detailed simulators that shares with NEST a focus on ease-of-use and scaling up to large networks well. In this tutorial, we will show you how we create an Arbor simulation based on a NEST experiment, and observe how morphologies change measurements.

Preferred form of presentation Workshop
Topic area simulator technology and performance
Keywords simulation, performance, morphology, biological detail
Speaker time zone UTC+2
I agree to the copyright and license terms Yes
I agree to the declaration of honor Yes

Primary authors

Brent Huisman (JSC, Forschungszentrum Jülich, Germany) Thorsten Hater (JSC, Forschungszentrum Jülich, Germany)

Presentation materials

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