DeepTrees Practitioners Workshop: Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch
Tuesday 25 November 2025 -
09:00
Monday 24 November 2025
Tuesday 25 November 2025
09:00
Welcome & Introduction to DeepTrees
Welcome & Introduction to DeepTrees
09:00 - 09:30
Room: Hall 1 C
Overview of project goals, workshop aims, and roadmap.
09:30
Flash Talks: Open Source & Package Updates
Flash Talks: Open Source & Package Updates
09:30 - 10:45
Room: Hall 1 C
Short (~15 min) lightning presentations from the community on: - New features or modules in deeptrees - Use cases or applications built on deeptrees - Community datasets published or curated - Challenges, contributions, and future plans
10:45
Coffee break
Coffee break
10:45 - 11:00
Room: Hall 1 C
11:00
Hands-on Session 1: Fundamentals of Tree Crown Segmentation with Deep Learning
Hands-on Session 1: Fundamentals of Tree Crown Segmentation with Deep Learning
11:00 - 12:00
Room: Hall 1 C
Introduction to convolutional neural networks, UNet architectures, and the DeepTrees adaptation for tree crown delineation. Hands-on: Model architecture overview in PyTorch using sample orthoimages.
12:00
Lunch break
Lunch break
12:00 - 13:00
Room: Hall 1 C
13:00
Hands-on Session 2: Data Annotation and Preprocessing
Hands-on Session 2: Data Annotation and Preprocessing
13:00 - 14:00
Room: Hall 1 C
Working with aerial and UAV imagery — data formats, tiling, annotation (QGIS), and mask generation. Hands-on: Creating training and validation datasets.
14:00
Hands-on Session 3: Training and Improving a Tree Crown Segmentation Model with Active Learning
Hands-on Session 3: Training and Improving a Tree Crown Segmentation Model with Active Learning
14:00 - 15:00
Room: Hall 1 C
Step-by-step coding walkthrough for training and fine-tuning a DeepTrees segmentation model. Hands-on: Participants train and evaluate their own models on provided data.
15:00
Coffee break
Coffee break
15:00 - 15:30
Room: Hall 1 C
15:30
Hands-On Session 4: Model Evaluation and Ecological Analysis
Hands-On Session 4: Model Evaluation and Ecological Analysis
15:30 - 16:30
Room: Hall 1 C
Metrics for segmentation performance (IoU, precision-recall, F1 score) and post-processing for ecological insights (e.g., canopy cover, crown radius, species inference). Hands-on: Interpreting results and visualizing segmented tree crowns.
16:30
Panel and Open Discussion: From Models to Monitoring Systems
Panel and Open Discussion: From Models to Monitoring Systems
16:30 - 17:00
Room: Hall 1 C
Discussion on integrating outputs into DeepTrees workflows, FAIR data publication, and collaborative opportunities for long-term ecological monitoring