Name: Advances and Challenges in Zebrafish Image and Video Analysis
Start: 2025-06-25T09:00:00+02:00
End: 2025-06-25T12:05:00+02:00
Location: Schinkelhalle Potsdam

Advances and Challenges in Zebrafish Image and Video Analysis

Wednesday 25 June 2025 - 09:00

Monday 23 June 2025
Tuesday 24 June 2025
Wednesday 25 June 2025

09:00

09:00 - 09:05
Room: T-Werk Probebühne
09:05
09:05 - 10:10
Room: T-Werk Probebühne
Contributions

09:05 Integration of live-imaging with single-cell genomics to dissect spatiotemporal gene regulation and its impact on cell behavior in the developing zebrafish embryo - Anna Klaus

09:18 Highly-multiplexed smFISH of sectioned zebrafish embryos - Scott Lacadie

09:31 Developing a high-content imaging workflow to investigate the impact of environmental chemicals on intestinal macrophages in zebrafish larvae - Elena Katharina Nicolay (Helmholtz-Zentrum für Umweltforschung GmbH UFZ)

09:44 Leonardo: a toolset to remove sample-induced aberrations in light sheet microscopy images - Yu Liu (Technical University of Munich)

09:57 Low-cost multiperspective imaging of zebrafish - Nathalie Klug (Institute for Automation and Applied Informatics - Biomedical Engineering & Robotics)
10:10 Coffee Break
Coffee Break
10:10 - 10:25
Room: T-Werk Probebühne
10:25
10:25 - 11:30
Room: T-Werk Probebühne
Contributions

10:25 Zebrafish imaging workflows with Flamingo and Leonardo - Jan Huisken

10:38 Label-efficiency using self-supervised learning for classification of zebrafish embryo phenotypes in toxicity evaluations - Thomas Lautenschlager (KIT - IAI - ML4TIME)

10:51 High Content Screening in zebrafish embryos using automated image and video analysis – advancements and challenges - Stefan Scholz (UFZ - ETOX)

11:04 Challenges in the automated analysis of zebrafish startle response behaviour - Gaelle Hayot (KIT) Thomas Dickmeis (KIT)

11:17 A Research Data Management (RDM) framework for High-Content Screening (HCS) bioimaging and video data of zebrafish (Danio rerio) embryos - Riccardo Massei
11:30

11:30 - 11:55
Room: T-Werk Probebühne

11:55

11:55 - 12:00
Room: T-Werk Probebühne

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