Method Spotlight: Pipelines and Workflows
Monday 13 December 2021 -
14:00
Monday 13 December 2021
14:00
Pipelines and Workflows
-
Johannes Köster
Pipelines and Workflows
Johannes Köster
14:00 - 14:45
Room: 312/7
Data analyses usually entail the application of a combination of command line tools, scripts and notebooks to transform, filter, aggregate or plot data and results. In order to ensure sustained value for data analysis authors and the scientific community, an analysis has to be reproducible (for checking its technical validity), transparent (for checking its methodological validity), and adaptable (to enable future reuse). With over 1,000 citations and over 300,000 downloads, Snakemake is one of the most popular workflow management systems. This talk will present how Snakemake can be used to easily ensure above properties while minimising boilerplate code, maximising human readability, and ensuring efficient execution on any major computing platform.
14:45
Q & A
Q & A
14:45 - 15:00
Room: 312/7
15:00
Meet the Speaker
Meet the Speaker
15:00 - 17:00
Room: 312/7
Contributions
15:00
Block 1
15:30
Block 2
16:00
Block 3
16:30
Block 4