Open Microscopy Environment Remote Objects (OMERO) - A client-server software for managing, visualizing and analyzing microscopy images and associated metadata @UFZIn-Person Event

Friday 31 May 2024, 09:00 → 16:00 Europe/Berlin

(Disclaimer: The course takes place on demand. If a minimum number of participants is reached, we will set a date together. The course is an on-side course in Leipzig (Germany) and primarily designed and reserved for UFZ employees.)

Image storage, archiving and retrieval is of vital importance in today’s large scientific community. OMERO acts as a secure central repository for microscopy images and has many features and expansion points to integrate with your existing tools. OMERO is an open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata. The OMERO API allows clients to be written in Java, Python, C++ or MATLAB. The OMERO platform includes a Java client OMERO.insight, a Python-based web client OMERO.web, a Command Line Interface which uses Python, and a Java ImageJ plugin. OMERO also supports a scripting service which allows Python scripts to be run on the server and called from any of the other clients

Duration: 1 day   
Topics

• Brief overview on the REMBI (Recommended Metadata for Biological Images) module 
• Overview on the OMERO instance at UFZ. Interactive tools/scripts for data visualization, managing and analysis 
• Explore image data using OMERO.web or OMERO.insight. Upload images and related metadata 
• Integration of python scripting and analytical platforms (KNIME and Galaxy) for data handling, export and tagging 
• Overview on public repository such as the BioImage Archive (BIA) and IDR

 

Please use the link below to register. If a minimum number of participants has been reached, we will contact you to plan the event.